Issue 4
Journal for Veterinary Medicine, Biotechnology and Biosafety
Volume
1, Issue 4, December 2015, Pages 16–21
ISSN 2411-3174 (print version) ISSN 2411-0388
(online version)
Phylogenetic and molecular genetic
studies of porcine circovirus type II
Rudova N. G., Smolyaninova
Ye. V., Lymanska
O. Yu., Zlenko O. B.
National
Scientific Center ‘Institute of Experimental and Clinical Veterinary
Medicine’, Kharkiv, Ukraine, e-mail: antger@vet.kharkov.ua
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PDF (print version)
Citation for
print version: Rudova, N. G., Smolyaninova, Ye. V., Lymanska,
O. Yu. and Zlenko, O.
B. (2015) ‘Phylogenetic and molecular genetic
studies of porcine circovirus type II’, Journal for Veterinary Medicine, Biotechnology and Biosafety, 1(4), pp. 16–21.
Download
PDF (online version)
Citation for
online version: Rudova, N. G., Smolyaninova, Ye. V., Lymanska,
O. Yu. and Zlenko, O.
B. (2015) ‘Phylogenetic and molecular genetic
studies of porcine circovirus type II’, Journal for Veterinary Medicine, Biotechnology and Biosafety. [Online] 1(4), pp. 16–21.
Available at:
http://jvmbbs.kharkov.ua/archive/2015/volume1/issue4/oJVMBBS_2015014_016-021.pdf
Summary. The multiple farms all over the
world are affected with porcine circovirus
(PCV). This disease has been
occurred in Ukraine. This work has been aimed
to perform the phylogenetic and molecular genetic
studies of porcine circovirus type II that circulate
in Ukraine. This study involves wide spectrum of the molecular techniques,
including PCR, RT‑PCR
and sequencing of variable loci with the next following phylogenetic
analysis. The phylogenetic relationships of porcine circovirus type II that circulate in different geographical
regions were studied. The prospect of phylogenetic analysis for genotyping and molecular marking
of microorganisms was demonstrated. The porcine circovirus type II indication by the real-time PCR method was described.
Keywords: phylogenetic analysis, real-time PCR,
porcine circovirus type II
References:
Cano-Manuel, F. J., Lopez-Olvera, J., Fandos, P., Soriguer, R. C.,
Perez, J. M. and Granados, J. E. (2014) ‘Long-term monitoring of 10
selected pathogens in wild boar (Sus scrofa) in Sierra Nevada National Park, Southern
Spain’, Veterinary Microbiology, 174(1–2), pp.
148–154. doi: http://dx.doi.org/10.1016/j.vetmic.2014.06.017
Chae, C. (2005) ‘A review of porcine circovirus 2‑associated
syndromes and diseases’, The Veterinary Journal, 169(3), pp.
326–336. doi:
http://dx.doi.org/10.1016/j.tvjl.2004.01.012
Clark, E. G. and Harding, J. C. (1997) Circovirus — an emerging swine pathogen. In: ISU Swine Disease Conference
Proceedings. October, 1997, pp. 63–64.
Gerilovych,
A. P. (2009) ‘Methodology of calculation and theoretic study of quality
of oligonucleotides for nucleic acid detection of
animal pathogens on base of polymerase chain reaction’ [Metodolohiia rozrakhunku ta teoretychnoi perevirky yakosti olihonukleotydiv dlia vyiavlennia nukleinovykh kyslot patoheniv tvaryn na
osnovi polimeraznoi lantsiuhovoi reaktsii], Veterinary Biotechnology [Veterynarna biotekhnolohiia],
14, pp. 56–69. Available at: http://www.nbuv.gov.ua/old_jrn/Chem_Biol/VBtl/texts/2009-14/statti/09GAPPCR.pdf.
[in Ukrainian]
Kudin,
K. V. and Prokulevich, V. A. (2011) ‘The
cloning of the protein capsid gene of the Belarusian
porcine circovirus type 2 strain’ [Klonirovanie gena belka kapsida belorusskogo
shtamma tsirkovirusa sviney 2 tipa], Vestnik BSU. Series 2: Chemistry. Biology. Geography [Vestnik BGU.
Seriya 2.
Khimiya.
Biologiya.
Geografiya], 2, рр. 37–41. Available at: http://www.elib.bsu.by/bitstream/123456789/13852/1/37-41.pdf.
[in Russian]
Nawagitgul,
P., Harms, P. A., Sorden, S. D., Morozov,
I., Paul, P. S. and Bolin, S. R. (2000) ‘Open reading frame 2 of porcine circovirus type 2 encodes a major capsid
protein’, Journal of General Virology, 81(9), pp. 2281–2287.
doi: http://dx.doi.org/10.1099/0022-1317-81-9-2281
Olvera,
A., Cortey, M. and Segales,
J. (2007) ‘Molecular evolution of porcine circovirus
type 2 genomes: Phylogeny and clonality’, Virology,
357(2), pp. 175–185. doi:
http://dx.doi.org/10.1016/j.virol.2006.07.047
Opriessnig,
T., Meng, X.‑J.
and Halbur, P. G. (2007) ‘Porcine Circovirus type 2‑associated
disease: Update on current terminology, clinical manifestations, pathogenesis,
diagnosis, and intervention strategies’, Journal of Veterinary
Diagnostic Investigation, 19(6), pp. 591–615. doi: http://dx.doi.org/10.1177/104063870701900601
Rebrikov,
D. V., Samatov, G. A., Trofimov,
D. Yu., Semenov, P. A., Savilova, A. M., Kofiadi, I. A. and Abramov, D. D.
(2009) Real-time PCR [PTSR
‘v real’nom vremeni’].
2nd ed. Moscow: BINOM.
Laboratoriya znaniy. ISBN
9785996300860. [in Russian]
Sachse, K. (2003) ‘Specificity and
performance of diagnostic PCR assays’, Methods
of Molecular Biology, 216, pp. 3–29. doi: http://dx.doi.org/10.1385/1-59259-344-5:03
Saitou, N. and Nei, M. (1987) ‘The neighbor-joining method: A new method for reconstructing
phylogenetic trees’, Molecular Biology and
Evolution, 4(4), pp. 406–425. Available at: http://mbe.oxfordjournals.org/content/4/4/406.full.pdf
Segales,
J., Olvera, A., Grau-Roma,
L., Charreyre, C., Nauwynck,
H., Larsen, L., Dupont, K., McCullough, K., Ellis,
J., Krakowka, S., Mankertz,
A., Fredholm, M., Fossum,
C., Timmusk, S., Stockhofe-Zurwieden,
N., Beattie, V., Armstrong, D., Grassland, B., Baekbo,
P. and Allan, G. (2008) ‘PCV‑2
genotype definition and nomenclature’, Veterinary Record, 162(26),
pp. 867–868. doi: http://dx.doi.org/10.1136/vr.162.26.867
Tamura, K., Dudley, J., Nei, M. and Kumar, S.
(2007) ‘MEGA4: Molecular evolutionary genetics
analysis (MEGA) software version 4.0’, Molecular Biology and Evolution,
24(8), pp. 1596–1599. doi:
http://dx.doi.org/10.1093/molbev/msm092
Tischer, I., Rasch, R.
and Tochtermann, G. (1974) ‘Characterization of
papovavirus-and picornavirus-like
particles in permanent pig kidney cell lines’, Zentralblatt
fur Bakteriologie, Parasitenkunde,
Infektionskrankheiten und Hygiene. Erste Abteilung Originale. Reihe A: Medizinische Mikrobiologie und Parasitologie., 226(2), pp. 153–67.
Wiederkehr,
D. D., Sydler, T., Buergi,
E., Haessig, M., Zimmermann, D., Pospischil,
A., Brugnera, E. and Sidler,
X. (2009) ‘A new emerging genotype subgroup within PCV‑2b
dominates the PMWS epizooty in Switzerland’, Veterinary
Microbiology, 136(1–2), pp. 27–35. doi: http://dx.doi.org/10.1016/j.vetmic.2008.10.028